PREDICT Data Model

Schema IDhttps://models.d4cg.org/predict
Releasepredict-20270101
LicenseCC BY-NC 4.0
Concepts11 classes · 88 slots · 49 enums
Community
Rendered Raw
Demographics

Demographics contains subject identity, demographic characteristics, survival status, family and medical history, and longitudinal timing information needed to interpret records across the model.

SubjectCharacteristics 1..1

Core identifying and administrative characteristics for each subject in the data model.

SlotRangeSlot URIDescription
honest_broker_subject_id
string
ncit:C168949
Subject identifier assigned by the honest broker.
data_contributor_id
ncit:C168950
An identifier assigned to a data contributor.
data_source
ncit:C16493
Source of information collected in the course of a clinical trial, specifically used to differentiate between data as collected versus data that are derived or calculated. NOTE: In CDISC, a metadata attribute defined for each dataset variable in the Define.xml document of an SDTM submission that refers to the source of a variable (e.g., CRF, derived, sponsor defined, PRO, etc.). See also data element originator.
last_known_survival_status
age_last_contact
decimal
age_last_contact_unit
age_last_contact_precision
Slot Icons:Required

Timing 0..*

Timing information used to associate observations and events with a subject and timepoint.

Diagram
SlotRangeSlot URIDescription
honest_broker_subject_id
string
ncit:C168949
Subject identifier assigned by the honest broker.
timepoint
timing_age_at
decimal
age_unit
age_precision
ncit:C48045
A quantitative representation of the degree of accuracy necessary for or associated with a particular action.
Slot Icons:Required

FamilyMedicalHistory 0..*

Family medical history information for conditions reported among a subject's relatives.

Diagram
SlotRangeSlot URIDescription
honest_broker_subject_id
string
ncit:C168949
Subject identifier assigned by the honest broker.
relation_honest_broker_subject_id
string
relation
ncit:C21480
A person related by blood or marriage.
condition
syndromic_condition
source
Slot Icons:Required

Demographics 1..1

Demographic characteristics of each subject, including sex, race, and ethnicity.

Diagram
SlotRangeSlot URIDescription
honest_broker_subject_id
string
ncit:C168949
Subject identifier assigned by the honest broker.
sex
ncit:C28421
An arbitrary categorization of individuals based on the assemblage of physical properties related to reproduction, and commonly associated with the designation of such categories as female and male. This designation is based on a combination of observable information from organ inventories, morphological assessments, hormone assessments, genetic testing, observed primary and secondary sex characteristics, menstrual status, and/or obstetric history. Current sex designation may or may not be the same as an individual's sex assigned or reported at birth. IMPORTANT NOTICE: The NCI Thesaurus contains biomedical terminologies that NCI does not own or control. This concept contains gender-related content that does not comply with Executive Order 14168.
ethnicity
ncit:C16564
A social group characterized by a distinctive social and cultural tradition that is maintained from generation to generation. Members share a common history and origin and a sense of identification with the group. They have similar and distinctive features in their lifestyle habits and shared experiences. They often have a common genetic heritage which may be reflected in their experience of health and disease.
race
ncit:C17049
A geographic ancestral origin category that is assigned to a population group based mainly on physical characteristics that are thought to be distinct and inherent.
Slot Icons:Required

MedicalHistory 0..*

Medical history conditions reported for a subject.

Diagram
SlotRangeSlot URIDescription
honest_broker_subject_id
string
ncit:C168949
Subject identifier assigned by the honest broker.
age_at
decimal
age_unit
age_precision
ncit:C48045
A quantitative representation of the degree of accuracy necessary for or associated with a particular action.
medical_history_condition
ncit:C18772
A collection of information about a person's health. It may include information about allergies, illnesses and surgeries, and dates and results of physical exams, tests, screenings, and immunizations. It may also include information about medicines taken and about diet and exercise.
condition_other
string
ncit:C53263
Relevant elements of medical history, including preexisting medical conditions, events and facts (e.g., allergies, race, pregnancy, smoking and alcohol use, hepatic/renal dysfunction, etc.) not listed in MedWatch form.
condition_code
string
code_system
Slot Icons:Required
Testing

Testing contains biometric, biospecimen, laboratory, and genetic observations used to characterize subjects and support diagnosis and longitudinal evaluation.

Biometrics 0..*

Biometric measurements collected for a subject, including measurement values and associated timing.

Diagram
SlotRangeSlot URIDescription
honest_broker_subject_id
string
ncit:C168949
Subject identifier assigned by the honest broker.
age_at
decimal
age_unit
age_precision
ncit:C48045
A quantitative representation of the degree of accuracy necessary for or associated with a particular action.
measurement_type
measurement_numeric
decimal
measurement_unit
z_score
decimal
Slot Icons:Required

Biospecimen 0..*

Biospecimens collected from a subject and their specimen types.

Diagram
SlotRangeSlot URIDescription
honest_broker_subject_id
string
ncit:C168949
Subject identifier assigned by the honest broker.
sample_type
Slot Icons:Required

GeneticAnalysis 0..*

Genetic and genomic analysis results for a subject, including genes, alterations, methods, and reported significance.

Diagram
SlotRangeSlot URIDescription
honest_broker_subject_id
string
ncit:C168949
Subject identifier assigned by the honest broker.
age_at
decimal
age_unit
age_precision
ncit:C48045
A quantitative representation of the degree of accuracy necessary for or associated with a particular action.
causative_alteration
status
genetic_analysis_sample_type
laboratory_name
cytogenetic_location
string
method
gene
ncit:C173595
The gene symbol that represents either a single gene that has a mutation or the gene that comprises the 5' portion of the coding sequence involved in a fusion gene mutation.
alteration_type
alteration_effect
ncit:C204195
The effect of a sequence change on the function of an RNA, DNA, or protein.
alteration_region
hgvs_accession
string
hgvs_coding
string
ncit:C198546
The designation of a DNA coding sequence variation based on the Human Genome Variation Society (HGVS) nomenclature guidelines.
hgvs_protein
string
ncit:C97928
A variation in the sequence of a specific gene product.
hgvs_genomic
string
iscn
string
ncit:C156450
An international standard for human chromosome nomenclature, which includes band names, symbols and abbreviated terms used in the description of human chromosome and chromosome abnormalities.
reported_significance
allelic_state
maf_numeric
decimal
ncit:C173545
The determination of the ratio of variant alleles to wild-type alleles present in a sample.
mosaicism
ncit:C92976
The occurrence of 2 or more cell lines with different genetic or chromosomal make-up, within a single individual or tissue.
external_ref_id
string
external_ref_id_system
Slot Icons:Required

Testing 0..*

Clinical laboratory and diagnostic test results collected for a subject.

Diagram
SlotRangeSlot URIDescription
honest_broker_subject_id
string
ncit:C168949
Subject identifier assigned by the honest broker.
age_at
decimal
age_unit
age_precision
ncit:C48045
A quantitative representation of the degree of accuracy necessary for or associated with a particular action.
test_type
testing_method
testing_measurement_type
result_modifier
string
result_numeric
string
ncit:C185629
The result of a function test expressed as a number.
result_unit
reference_range
string
result_interpretation
fasting_status
post_glucose_timepoint
string
post_glucose_timepoint_unit
Slot Icons:Required
Disease Attributes

Disease Attributes contains clinical characteristics related to diabetes, glycemic status, hypoglycemia, diabetic ketoacidosis, glucose monitoring, diet, exercise, and other features used to characterize disease status over time.

DiseaseCharacteristics 0..*

Clinical characteristics and observations related to a subject's diabetes and glycemic status.

Diagram
SlotRangeSlot URIDescription
honest_broker_subject_id
string
ncit:C168949
Subject identifier assigned by the honest broker.
age_at
decimal
age_unit
age_precision
ncit:C48045
A quantitative representation of the degree of accuracy necessary for or associated with a particular action.
diabetes_status
hypoglycemia_frequency
severe_hypoglycemia_frequency
dka
time_in_range
decimal
cgm_range
cgm_context
diet
exercise
Slot Icons:Required
Intervention

Intervention contains medication and treatment records, including medication class, drug, dose, route, frequency, treatment timing, and reasons for treatment discontinuation.

Treatment 0..*

Medication and treatment information for a subject, including dose, route, frequency, and treatment timing.

Diagram
SlotRangeSlot URIDescription
honest_broker_subject_id
string
ncit:C168949
Subject identifier assigned by the honest broker.
age_at_start
decimal
age_at_stop
decimal
age_unit
age_precision
ncit:C48045
A quantitative representation of the degree of accuracy necessary for or associated with a particular action.
reason_stop
dm_medication_class
medication_class_other
medication_name
string
medication_code
string
medication_concentration
medication_dose
decimal
medication_unit
frequency
route
ncit:C186559
The intended area to be affected by the choice of a particular route of administration of a medication.
Slot Icons:Required

AgeLastContactPrecisionEnum

AgeLastContactUnitEnum

AllelicStateEnum

AlterationEffectEnum

AlterationRegionEnum

AlterationTypeEnum

CGMContextEnum

CGMRangeEnum

CodeSystemEnum

ConditionEnum

DKAEnum

DMMedicationClassEnum

DataContributorIDEnum

DataSourceEnum

DiabetesStatusEnum

EthnicityEnum

ExternalRefIDSystemEnum

FastingStatusEnum

FrequencyEnum

GeneEnum

GeneticAnalysisSampleTypeEnum

HypoglycemiaFrequencyEnum

LaboratoryNameEnum

LastKnownSurvivalStatusEnum

MeasurementTypeEnum

MeasurementUnitEnum

MedicalHistoryConditionEnum

MedicationClassOtherEnum

MedicationConcentrationEnum

MedicationUnitEnum

MethodEnum

PostGlucoseTimepointUnitEnum

RaceEnum

ReasonStopEnum

RelationEnum

ReportedSignificanceEnum

ResultInterpretationEnum

ResultUnitEnum

RouteEnum

SampleTypeEnum

SexEnum

SourceEnum

StatusEnum

SyndromicConditionEnum

TestTypeEnum

TestingMeasurementTypeEnum

TestingMethodEnum

TimepointEnum

YesNoEnum


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